Genome wide study of cysteine rich receptor like proteins in Gossypium sp.
Genome wide study of cysteine rich receptor like proteins in Gossypium sp.
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DOI：
10.1038/s41598-022-08943-1
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发表时间：
2022-03-22
影响因子：
4.6
通讯作者：
Mukhtar MS
中科院分区：
文献类型：
--
作者：
Hussain A;Asif N;Pirzada AR;Noureen A;Shaukat J;Burhan A;Zaynab M;Ali E;Imran K;Ameen A;Mahmood MA;Nazar A;Mukhtar MS
富含半胱氨酸的受体样激酶（CRKs）是一类跨膜的受体样激酶，在植物的适应过程中起着重要的作用。因此，棉花是纺织工业的主要纤维来源，但环境压力限制了其生长和生产。在这里，我们已经进行了深入的计算分析CRKs在五个棉属物种，包括G。arboreum（60个基因），G. raimondii（74个基因）、G. herbaceum（65个基因），G. hirsutum（118个基因），G. barbadense（120个基因）。CRK共分为11个大类和43个亚类，并发现了ALMT、FUSC_2、Cript、FYVE和Pkinase等CRK相关的新结构域。其中DUF26_DUF26_Pkinase_Tyr是常见的，并且在不同的生物和非生物胁迫下具有升高的表达。此外，35个陆地植物的比较确定了几个新的CRKs域架构。同样，在CLCuD抗性G.多毛植物miRNA靶侧预测及其在不同组织中的表达谱预测miR172是调节miR的主要CRK。CRKs的表达谱鉴定了在某些胁迫条件下具有共表达的多个簇。CLCuD下的表达分析突出了GhCRK057、GhCRK059、GhCRK058和GhCRK081在抗性登录中的作用。这些结果为今后的功能分析提供了基础数据，也为其他重要农作物的功能研究提供了参考。
Cysteine-rich receptor-like-kinases (CRKs), a transmembrane subfamily of receptor-like kinase, play crucial roles in plant adaptation. As such cotton is the major source of fiber for the textile industry, but environmental stresses are limiting its growth and production. Here, we have performed a deep computational analysis of CRKs in five Gossypium species, including G. arboreum (60 genes), G. raimondii (74 genes), G. herbaceum (65 genes), G. hirsutum (118 genes), and G. barbadense (120 genes). All identified CRKs were classified into 11 major classes and 43 subclasses with the finding of several novel CRK-associated domains including ALMT, FUSC_2, Cript, FYVE, and Pkinase. Of these, DUF26_DUF26_Pkinase_Tyr was common and had elevated expression under different biotic and abiotic stresses. Moreover, the 35 land plants comparison identified several new CRKs domain-architectures. Likewise, several SNPs and InDels were observed in CLCuD resistant G. hirsutum. The miRNA target side prediction and their expression profiling in different tissues predicted miR172 as a major CRK regulating miR. The expression profiling of CRKs identified multiple clusters with co-expression under certain stress conditions. The expression analysis under CLCuD highlighted the role of GhCRK057, GhCRK059, GhCRK058, and GhCRK081 in resistant accession. Overall, these results provided primary data for future potential functional analysis as well as a reference study for other agronomically important crops.
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影响因子：
14.9
作者：
Azad A;Pavlopoulos GA;Ouzounis CA;Kyrpides NC;Buluç A
通讯作者：
Buluç A
影响因子：
5.4
作者：
Byers, Robert L.;Harker, David B.;Yourstone, Scott M.;Maughan, Peter J.;Udall, Joshua A.
通讯作者：
Udall, Joshua A.
影响因子：
5.1
作者：
Chen, KG;Du, LQ;Chen, ZX
通讯作者：
Chen, ZX
影响因子：
4.1
作者：
Akmal, Mohd.;Baig, Mirza S.;Khan, Jawaid A.
通讯作者：
Khan, Jawaid A.
DOI：
10.1142/s0219720018500142
发表时间：
2018-08-01
影响因子：
1
作者：
Basit, Abdul Hannan;Abbasi, Wajid Arshad;Minhas, Fayyaz Ul Amir Afsar
通讯作者：
Minhas, Fayyaz Ul Amir Afsar