Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions.
Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions.
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DOI：
10.1093/bioinformatics/btw725
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发表时间：
2017-03-01
期刊：
影响因子：
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通讯作者：
Krause L
中科院分区：
文献类型：
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作者：
Zakrzewski M;Proietti C;Ellis JJ;Hasan S;Brion MJ;Berger B;Krause L
Calypso是一个易于使用的在线软件套件，允许非专家用户从元基因组或16S rDNA数据集中挖掘、解释和比较分类信息。Calypso专注于能够识别复杂环境-微生物组关联的多变量统计方法。该软件实现了定量可视化、统计测试、多元分析、监督学习、因子分析、多变量回归、网络分析和多样性估计。通过维基页面提供全面的帮助页面、教程和视频。网络界面可通过http://cgenome.net/calypso/.访问软件是用JAVA、PERL和R编写的，源代码可从Zenodo(https://zenodo.org/record/50931).)获得该软件对非商业用户免费提供。补充数据可在生物信息学在线上获得。
Calypso is an easy-to-use online software suite that allows non-expert users to mine, interpret and compare taxonomic information from metagenomic or 16S rDNA datasets. Calypso has a focus on multivariate statistical approaches that can identify complex environment-microbiome associations. The software enables quantitative visualizations, statistical testing, multivariate analysis, supervised learning, factor analysis, multivariable regression, network analysis and diversity estimates. Comprehensive help pages, tutorials and videos are provided via a wiki page. The web-interface is accessible via http://cgenome.net/calypso/. The software is programmed in Java, PERL and R and the source code is available from Zenodo (https://zenodo.org/record/50931). The software is freely available for non-commercial users. Supplementary data are available at Bioinformatics online.