SPARQL-enabled identifier conversion with Identifiers.org.
SPARQL-enabled identifier conversion with Identifiers.org.
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DOI：
10.1093/bioinformatics/btv064
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发表时间：
2015-06-01
期刊：
影响因子：
--
通讯作者：
Laibe C
中科院分区：
文献类型：
--
作者：
Wimalaratne SM;Bolleman J;Juty N;Katayama T;Dumontier M;Redaschi N;Le Novère N;Hermjakob H;Laibe C
Motivation: On the semantic web, in life sciences in particular, data is often distributed via multiple resources. Each of these sources is likely to use their own International Resource Identifier for conceptually the same resource or database record. The lack of correspondence between identifiers introduces a barrier when executing federated SPARQL queries across life science data. Results: We introduce a novel SPARQL-based service to enable on-the-fly integration of life science data. This service uses the identifier patterns defined in the Identifiers.org Registry to generate a plurality of identifier variants, which can then be used to match source identifiers with target identifiers. We demonstrate the utility of this identifier integration approach by answering queries across major producers of life science Linked Data. Availability and implementation: The SPARQL-based identifier conversion service is available without restriction at http://identifiers.org/services/sparql. Contact: sarala@ebi.ac.uk
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影响因子：
3
作者：
van Iersel MP;Pico AR;Kelder T;Gao J;Ho I;Hanspers K;Conklin BR;Evelo CT
通讯作者：
Evelo CT
DOI：
10.1093/bioinformatics/btt765
发表时间：
2014-05-01
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Jupp S;Malone J;Bolleman J;Brandizi M;Davies M;Garcia L;Gaulton A;Gehant S;Laibe C;Redaschi N;Wimalaratne SM;Martin M;Le Novère N;Parkinson H;Birney E;Jenkinson AM
通讯作者：
Jenkinson AM
影响因子：
--
作者：
Wimalaratne SM;Grenon P;Hermjakob H;Le Novère N;Laibe C
通讯作者：
Laibe C
UNICHEM：统一的化学结构交叉引用和标识符跟踪系统。
影响因子：
8.6
作者：
Chambers J;Davies M;Gaulton A;Hersey A;Velankar S;Petryszak R;Hastings J;Bellis L;McGlinchey S;Overington JP
通讯作者：
Overington JP
影响因子：
14.9
作者：
Wein SP;Côté RG;Dumousseau M;Reisinger F;Hermjakob H;Vizcaíno JA
通讯作者：
Vizcaíno JA