The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond
The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond
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DOI：
10.1104/pp.105.060707
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发表时间：
2005-07-01
期刊：
影响因子：
7.4
通讯作者：
Tanksley, SD
中科院分区：
文献类型：
--
作者：
Mueller, LA;Solow, TH;Tanksley, SD
Sol Genomics网络（SGN; http：//sgn.cornell.edu）是一种迅速发展的比较资源，用于溶酶科家族的植物，其中包括重要的农作物和模型植物，例如马铃薯（Solanum tuberosum），茄子（Solanum Melongena）（Solanum Melongena）（Solanum Melongena） ），胡椒粉（辣椒辣椒）和番茄（溶胶lycopersicum）。 SGN的目的是使用比较基因组学方法将这些物种相互联系，并通过拟南芥（拟南芥）的完全测序的基因组将它们与其他双子座联系起来。 SGN当前包含用于溶阿酸物种的地图和标记数据，该物种是具有计算衍生的单基因集的大型表达序列TAG收集，这是一个广泛的表型信息数据库，用于诱变的番茄种群，以及相关的工具，例如实时定量定量性状特质基因座。最近，国际茄科项目（SOL）成立为30多个国家 /地区的甲酸研究伞组织，以解决植物生物学中的重要问题。 SOL项目的第一个基石是对番茄基因组整个圣体部分的测序。 SGN正在与其他生物信息学中心合作，为番茄测序项目建立生物信息学基础架构，并实施大型SOL项目的生物信息学策略。 SGN的总体目标是以直观的比较格式提供信息，从而促进了对索拉纳科家族适应和表型多样性的调查的系统方法，该家族中的其他物种（例如咖啡（Coffea Arabica）），例如咖啡（咖啡）（Coffea Arabica），例如咖啡（Coffea Arabica），巫术及以后。
The SOL Genomics Network ( SGN;http://sgn.cornell.edu) is a rapidly evolving comparative resource for the plants of the Solanaceae family, which includes important crop and model plants such as potato ( Solanum tuberosum), eggplant ( Solanum melongena), pepper ( Capsicum annuum), and tomato ( Solanum lycopersicum). The aim of SGN is to relate these species to one another using a comparative genomics approach and to tie them to the other dicots through the fully sequenced genome of Arabidopsis ( Arabidopsis thaliana). SGN currently houses map and marker data for Solanaceae species, a large expressed sequence tag collection with computationally derived unigene sets, an extensive database of phenotypic information for a mutagenized tomato population, and associated tools such as real-time quantitative trait loci. Recently, the International Solanaceae Project ( SOL) was formed as an umbrella organization for Solanaceae research in over 30 countries to address important questions in plant biology. The first cornerstone of the SOL project is the sequencing of the entire euchromatic portion of the tomato genome. SGN is collaborating with other bioinformatics centers in building the bioinformatics infrastructure for the tomato sequencing project and implementing the bioinformatics strategy of the larger SOL project. The overarching goal of SGN is to make information available in an intuitive comparative format, thereby facilitating a systems approach to investigations into the basis of adaptation and phenotypic diversity in the Solanaceae family, other species in the Asterid clade such as coffee ( Coffea arabica), Rubiaciae, and beyond.