Genome Sequence Resource for Erysiphe necator NAFU1, a Grapevine Powdery Mildew Isolate Identified in Shaanxi Province of China
Genome Sequence Resource for Erysiphe necator NAFU1, a Grapevine Powdery Mildew Isolate Identified in Shaanxi Province of China
复制标题
中国陕西省鉴定的葡萄白粉病分离株白粉菌 NAFU1 的基因组序列资源
DOI：
10.1094/mpmi-03-21-0061-a
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发表时间：
2021
影响因子：
3.5
通讯作者：
Ying-Qiang Wen
中科院分区：
文献类型：
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作者：
Xingyuan Zhang;Bo Mu;Kaicheng Cui;Min Liu;Guihua Ke;Yongtao Han;Ying Wu;Shunyuan Xiao;Ying-Qiang Wen
Zhang et al. 34：1446-1449（2021）的作者撤回了这篇文章，因为最初报道的NAFU 1基因组组装受到了污染。这篇文章于2022年11月28日被撤回，未来将在NCBI对NAFU 1基因组组装进行更正。葡萄白粉菌（Erysiphe necatoris）是一种经济上重要的生物营养型真菌病原体，负责葡萄藤上的白粉病。目前，基因组序列可用于只有少数。necatorisolates从美国。基于Nanopore和Illumina测序技术的组合，我们在这里展示了E. necator，NAFU 1，在中国鉴定。我们总共获得了15.93 Gb的原始读取。将这些读段加工成61.12-Mb的基因组组装体，其含有73个重叠群，其中N50为2.06 Mb，最大长度为6.05 Mb。结合三个基因预测模块的结果（即，一个基于证据的基因建模器[EVidenceModeler]，一个从头算基因建模器，和一个基于同源性的基因建模器），我们预测了7,235个蛋白质编码基因的组装基因组中的E。necatorNAFU 1.这些信息将有助于研究大肠杆菌的基因组进化和致病机制。通过比较基因组序列分析和其他分子遗传工具，研究了necator和其他白粉病物种。版权所有© 2021作者。这是一篇开放获取的文章，在CC BY-NC-ND 4.0国际许可下分发。
The authors of Zhang et al. 34:1446–1449 (2021) retracted this article because the initially reported genome assembly of NAFU1 was contaminated. This article was retracted on 28 November 2022, and the correction of the NAFU1 genome assembly at NCBI will be made in the future.Erysiphe necatoris an economically important biotrophic fungal pathogen responsible for powdery mildew disease on grapevine. Currently, genome sequences are available for only a fewE. necatorisolates from the United States. Based on the combination of Nanopore and Illumina sequencing technologies, we present here the complete genome assembly for an isolate ofE. necator, NAFU1, identified in China. We acquired a total of 15.93 Gb of raw reads. These reads were processed into a 61.12-Mb genome assembly containing 73 contigs with an N50of 2.06 Mb and a maximum length of 6.05 Mb. Combining the results of three gene-prediction modules (i.e., an evidence-based gene modeler [EVidenceModeler], an ab initio gene modeler, and a homology-based gene modeler), we predicted 7,235 protein-coding genes in the assembled genome ofE. necatorNAFU1. This information will facilitate studies of genome evolution and pathogenicity mechanisms ofE. necatorand other powdery mildew species through comparative genome sequence analysis and other molecular genetic tools.Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.