Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
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DOI:
10.1038/s41592-023-02145-x
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发表时间:
2024-01-08
期刊:
影响因子:
48
通讯作者:
Bollmann,Steffen
Bollmann,Steffen
中科院分区:
生物学1区
文献类型:
--
作者:
Renton,Angela I.;Dao,Thuy T.;Bollmann,Steffen

文献摘要

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神经成像研究需要专门构建的分析软件,安装起来具有挑战性,并且可能会在不同的计算环境中产生不同的结果。面向社区的开源Neurodesk平台(https://www.neurodesk.org/)利用了一套全面且不断增长的神经成像软件容器。Neurodesk包括一个浏览器可访问的虚拟桌面,命令行界面和计算笔记本兼容性,允许在个人工作站,高性能计算机和云上进行可访问,灵活,便携和完全可再现的神经成像分析。
Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform (https://www.neurodesk.org/) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.