AIRR Community Guide to Planning and Performing AIRR-Seq Experiments.

AIRR Community Guide to Planning and Performing AIRR-Seq Experiments.
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AIRR 社区规划和执行 AIRR-Seq 实验指南。

DOI:
10.1007/978-1-0716-2115-8_15
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发表时间:
2022
期刊:
Methods in molecular biology (Clifton, N.J.)
影响因子:
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通讯作者:
AIRRCommunity
AIRRCommunity
中科院分区:
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文献类型:
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作者:
Eugster,Anne;Bostick,MagnoliaL;Gupta,Nidhi;Mariotti-Ferrandiz,Encarnita;Kraus,Gloria;Meng,Wenzhao;Soto,Cinque;Trück,Johannes;Stervbo,Ulrik;LuningPrak,ElineT;AIRRCommunity

文献摘要

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适应性免疫受体库的高通量测序(IG和TR重排的AIRR-seq)的发展为深入分析免疫系统提供了新的前沿。在过去的十年里,协议、实验方法和计算工具出现了爆炸式增长。在本章中,我们讨论了规划一个成功的AIRR-seq实验的主要考虑因素,以及控制和评估实验结果的基本策略。AIRR社区的成员撰写了本版本中的几个章节,其中包括成功进行,分析和共享AIRR-seq项目的分步说明。
The development of high-throughput sequencing of adaptive immune receptor repertoires (AIRR-seq of IG and TR rearrangements) has provided a new frontier for in-depth analysis of the immune system. The last decade has witnessed an explosion in protocols, experimental methodologies, and computational tools. In this chapter, we discuss the major considerations in planning a successful AIRR-seq experiment together with basic strategies for controlling and evaluating the outcome of the experiment. Members of the AIRR Community have authored several chapters in this edition, which cover step-by-step instructions to successfully conduct, analyze, and share an AIRR-seq project.