SynView: a GBrowse-compatible approach to visualizing comparative genome data
SynView: a GBrowse-compatible approach to visualizing comparative genome data
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DOI：
10.1093/bioinformatics/btl389
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发表时间：
2006-09-15
期刊：
影响因子：
5.8
通讯作者：
Kissinger, Jessica C.
中科院分区：
文献类型：
--
作者：
Wang, Haiming;Su, Yanqi;Kissinger, Jessica C.
我们提出了SynView，一个简单而通用的方法来动态可视化多物种的比较基因组数据。它是一个轻量级的应用程序，基于流行的可配置的基于Web的GBrowse框架。它可以用于各种数据库，并为用户提供高度的交互性。该工具是用Perl编写的，运行在GBrowse框架之上。它在PlasmoDB（http：//www.example.com）和CryptoDB（www.CryptoDB.org）项目中使用，并且可以很容易地集成到其他跨物种比较基因组项目中。www.PlasmoDB.org
We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects.