MathSBML: a package for manipulating SBML-based biological models
MathSBML: a package for manipulating SBML-based biological models
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DOI：
10.1093/bioinformatics/bth271
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发表时间：
2004-11-01
期刊：
影响因子：
5.8
通讯作者：
Doyle, J
中科院分区：
文献类型：
--
作者：
Shapiro, BE;Hucka, M;Doyle, J
MathSBML是一个为操作系统生物学标记语言（SBML）模型而设计的Mathematica包。它将SBML模型转换为Mathematica数据结构，并提供了操作和评估这些模型的平台。一旦MathSBML读取了一个模型，它就与标准的Mathematica函数完全兼容，比如NDSolve（一个微分代数方程求解器）。MathSBML还提供了用于查看、操作和运行数值模拟的应用程序编程接口；导出SBML模型；以及将SBML模型转换为其他格式，如XPP、HTML和FORTRAN。通过访问Mathematica的全部功能，MathSBML可以完全扩展到任何规模或复杂性的SBML模型。
MathSBML is a Mathematica package designed for manipulating Systems Biology Markup Language (SBML) models. It converts SBML models into Mathematica data structures and provides a platform for manipulating and evaluating these models. Once a model is read by MathSBML, it is fully compatible with standard Mathematica functions such as NDSolve (a differential-algebraic equations solver). MathSBML also provides an application programming interface for viewing, manipulating, running numerical simulations; exporting SBML models; and converting SBML models in to other formats, such as XPP, HTML and FORTRAN. By accessing the full breadth of Mathematica functionality, MathSBML is fully extensible to SBML models of any size or complexity.