resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes
resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes
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DOI：
10.1101/2022.08.22.504740
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发表时间：
2023-07
影响因子：
4.3
通讯作者：
A. B. Duthie1;Rosie Mangan1;Chintamani Rose McKeon1;Matthew C. Tinsley1;Luc F. Bussière2
中科院分区：
文献类型：
--
作者：
A. B. Duthie1;Rosie Mangan1;Chintamani Rose McKeon1;Matthew C. Tinsley1;Luc F. Bussière2
农药抗药性的演变是一个普遍存在的问题，可能对全球粮食安全造成严重后果。我们介绍了resevol R包，它模拟了基于个体的害虫模型与不断发展的基因组，产生复杂的，多基因的和协变性状影响害虫的生活史和农药抗性。模拟是建立在一个空间上明确和高度可定制的景观，其中作物和农药的应用和轮换可以有所不同，使该软件包成为一个高度灵活的工具，用于害虫管理和抗性进化的一般和战术模型。我们提出了resevol包的主要功能，并演示了它的使用一个简单的例子模拟害虫与两个协变性状。resevol R软件包在GNU公共许可证下是开源的。所有源代码和文档都可以在GitHub上找到。
The evolution of pesticide resistance is a widespread problem with potentially severe consequences for global food security. We introduce the resevol R package, which simulates individual-based models of pests with evolving genomes that produce complex, polygenic, and covarying traits affecting pest life history and pesticide resistance. Simulations are modelled on a spatially-explicit and highly customisable landscape in which crop and pesticide application and rotation can vary, making the package a highly flexible tool for both general and tactical models of pest management and resistance evolution. We present the key features of the resevol package and demonstrate its use for a simple example simulating pests with two covarying traits. The resevol R package is open source under GNU Public License. All source code and documentation are available on GitHub.