PhytoPath: an integrative resource for plant pathogen genomics.
PhytoPath: an integrative resource for plant pathogen genomics.
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DOI：
10.1093/nar/gkv1052
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发表时间：
2016-01-04
影响因子：
14.9
通讯作者：
Kersey PJ
中科院分区：
文献类型：
--
作者：
Pedro H;Maheswari U;Urban M;Irvine AG;Cuzick A;McDowall MD;Staines DM;Kulesha E;Hammond-Kosack KE;Kersey PJ
PhytoPath （www.phytopathdb.org）是植物病原体物种基因组和表型数据的资源，整合了来自PHI-base的基因表型数据，这是一个经过实验验证的致病性基因的专业策划目录，以及用于数据可视化和分析的Ensembl工具。该资源集中于真菌、原生生物（卵菌）和细菌植物病原体，这些基因组已经测序和注释。使用基于生物的查询工具，可以很容易地在所有植物病原体物种中识别具有相关ph基数据的基因，并在Ensembl基因组浏览器上显示其基因组背景。PhytoPath资源包含来自87种植物病原体的135个基因组序列数据，以及1364个针对其致病性和作为化学干预靶点的基因。WebApollo在线基因编辑器提供了对基因模型的社区注释的支持，我们正在与感兴趣的社区合作，以改进对选定物种的参考注释。
PhytoPath (www.phytopathdb.org) is a resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an expertly curated catalog of genes with experimentally verified pathogenicity, with the Ensembl tools for data visualization and analysis. The resource is focused on fungi, protists (oomycetes) and bacterial plant pathogens that have genomes that have been sequenced and annotated. Genes with associated PHI-base data can be easily identified across all plant pathogen species using a BioMart-based query tool and visualized in their genomic context on the Ensembl genome browser. The PhytoPath resource contains data for 135 genomic sequences from 87 plant pathogen species, and 1364 genes curated for their role in pathogenicity and as targets for chemical intervention. Support for community annotation of gene models is provided using the WebApollo online gene editor, and we are working with interested communities to improve reference annotation for selected species.