MetaMap Lite: an evaluation of a new Java implementation of MetaMap

MetaMap Lite: an evaluation of a new Java implementation of MetaMap
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DOI:
10.1093/jamia/ocw177
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发表时间:
2017-07-01
影响因子:
6.4
通讯作者:
Aronson, Alan R.
Aronson, Alan R.
中科院分区:
管理学2区
文献类型:
--
作者:
Demner-Fushman, Dina;Rogers, Willie J.;Aronson, Alan R.

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MetaMap是一个广泛使用的命名实体识别工具,它可以识别来自统一医学语言系统元词库的文本概念。本研究介绍了MetaMap Lite,在Java中的一些基本MetaMap功能的实现。在几个生物医学文献和临床文本的集合中,MetaMap Lite展示了实时速度和精度,召回率和F-1分数,与MetaMap和其他流行的生物医学文本处理工具,临床文本分析和知识提取系统(cTAKES)和DNorm相当或超过它们。
MetaMap is a widely used named entity recognition tool that identifies concepts from the Unified Medical Language System Metathesaurus in text. This study presents MetaMap Lite, an implementation of some of the basic MetaMap functions in Java. On several collections of biomedical literature and clinical text, MetaMap Lite demonstrated real-time speed and precision, recall, and F-1 scores comparable to or exceeding those of MetaMap and other popular biomedical text processing tools, clinical Text Analysis and Knowledge Extraction System (cTAKES) and DNorm.