The ERN Cryo-EM Federated Instrument Pilot Project
The ERN Cryo-EM Federated Instrument Pilot Project
复制标题
ERN Cryo-EM 联合仪器试点项目
DOI：
10.1145/3491418.3535141
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发表时间：
2022
期刊：
影响因子：
--
通讯作者：
Ludgwig, Morgan
中科院分区：
文献类型：
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作者：
Dougherty, Maureen;Zink, Michael;von Oehsen, Barr;Dalenberg, Kenneth;Desinghu, Bala;Kaelber, Jason;Schafer, Jeremy;Goodhue, John;Hey, Wolf;Ludgwig, Morgan
从NSF（OAC-2018927）资助的社区外联会议和研讨会的生态系统研究网络（原东部区域网络）系列的数百名参与者收集的反馈和调查数据显示，结构生物学仪器驱动的科学正在被迫从独立的岛屿过渡到联合广域互联网访问仪器。本文讨论了ERN CryoEM联合仪器试点项目的第一阶段，其目标是通过实施ERN联合OpenCI实验室的仪器CI Cloudlet设计，促进计算和电子显微镜接口的机构间合作。结论将是一个基于Web的门户网站，利用对仪器的联合访问，利用边缘计算与云计算的工作流程，沿着实时监控实验参数调整和决策。其目的是通过这些科学工具的民主化，促进团队科学和科学创新，重点是代表性不足和资源不足的机构。
Feedback and survey data collected from hundreds of participants of the Ecosystem for Research Networking (formerly Eastern Regional Network) series of NSF (OAC-2018927) funded community outreach meetings and workshops revealed that Structural Biology Instrument driven science is being forced to transition from self-contained islands to federated wide-area internet accessible instruments. This paper discusses phase 1 of the active ERN CryoEM Federated Instrument Pilot project whose goal is to facilitate inter-institutional collaboration at the interface of computing and electron microscopy through the implementation of the ERN Federated OpenCI Lab’s Instrument CI Cloudlet design. The conclusion will be a web-based portal leveraging federated access to the instrument, workflows utilizing edge computing in conjunction with cloud computing, along with real-time monitoring for experimental parameter adjustments and decisions. The intention is to foster team science and scientific innovation, with emphasis on under-represented and under-resourced institutions, through the democratization of these scientific instruments.
确定联合基础设施响应开发的研究合作挑战
DOI：
10.1145/3437359.3465594
发表时间：
2021
期刊：
Practice and Experience in Advanced Research Computing
影响因子：
--
作者：
Dougherty, Maureen;Zink, Michael;von Oehsen, James Barr
通讯作者：
von Oehsen, James Barr