SBML2TikZ: supporting the SBML render extension in LaTeX.
SBML2TikZ: supporting the SBML render extension in LaTeX.
复制标题
SBML2TikZ：支持 LaTeX 中的 SBML 渲染扩展。
DOI：
10.1093/bioinformatics/btq512
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发表时间：
2010
期刊：
影响因子：
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通讯作者：
Sauro,HerbertM
中科院分区：
文献类型：
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作者：
Shen,SiYuan;Bergmann,Frank;Sauro,HerbertM
动机：SBML渲染扩展使生化模型的颜色和形状信息能够存储在系统生物学标记语言（SBML）中。在一个便携的和支持良好的系统，如TeX的渲染存储的图形信息将是有用的研究人员准备文档和演示文稿。此外，由于渲染扩展还没有被许多应用程序支持，这是有益的，这样的渲染功能扩展到更流行的CellDesigner annotation.Results的注解以及：SBML 2 TikZ支持在流行的TeX排版系统的生化模型的图形自动生成。该库为矢量图形语言PGF/TikZ生成TeX宏命令脚本，该脚本可以编译成模型中描述的可缩放矢量图形。可用性：SBML 2 TikZ库的源代码，文档和编译的二进制文件可以在http://www.sbml2tikz.org上找到。此外，Web应用程序可以在http://www.sys-bio.org/layoutContact:hsauro@u.washington.eduSupplementary上获得信息：补充数据可以在Bioinformaticsonline上获得。
Motivation:The SBML Render Extension enables coloring and shape information of biochemical models to be stored in the Systems Biology Markup Language (SBML). Rendering of this stored graphical information in a portable and well supported system such as TeX would be useful for researchers preparing documentation and presentations. In addition, since the Render Extension is not yet supported by many applications, it is helpful for such rendering functionality be extended to the more popular CellDesigner annotation as well.Results:SBML2TikZ supports automatic generation of graphics for biochemical models in the popular TeX typesetting system. The library generates a script of TeX macro commands for the vector graphics languages PGF/TikZ that can be compiled into scalable vector graphics described in a model.Availability:Source code, documentation and compiled binaries for the SBML2TikZ library can be found at http://www.sbml2tikz.org. In addition, a web application is available at http://www.sys-bio.org/layoutContact:hsauro@u.washington.eduSupplementary information:Supplementary data are available atBioinformaticsonline.