BioScript: programming safe chemistry on laboratories-on-a-chip

BioScript: programming safe chemistry on laboratories-on-a-chip
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BioScript:在芯片实验室上进行安全化学编程

DOI:
10.1145/3441686
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发表时间:
2021
影响因子:
22.7
通讯作者:
Brisk, Philip
Brisk, Philip
中科院分区:
计算机科学3区
文献类型:
--
作者:
Ott, Jason;Loveless, Tyson;Curtis, Chris;Lesani, Mohsen;Brisk, Philip

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本文介绍了BioScript,一种用于可编程生物化学的领域特定语言(DSL),可在新兴的微流体平台上执行。这项研究的目标是提供一个简单,直观,类型安全的DSL,是可访问的生命科学从业者。该语言的新特性是其语法,旨在优化人类可读性;该论文的技术贡献是BioScript类型系统。类型系统确保特定于生物化学的某些类型的错误不会发生,例如可能不安全的化学物质的相互作用。结果是使用一个定制的编译器,实现theBioScript语言和类型系统。
This paper introducesBioScript, a domain-specific language (DSL) for programmable biochemistry that executes on emerging microfluidic platforms. The goal of this research is to provide a simple, intuitive, and type-safe DSL that is accessible to life science practitioners. The novel feature of the language is its syntax, which aims to optimize human readability; the technical contribution of the paper is theBioScripttype system. The type system ensures that certain types of errors, specific to biochemistry, do not occur, such as the interaction of chemicals that may be unsafe. Results are obtained using a custom-built compiler that implements theBioScriptlanguage and type system.
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