Enabling reusability of plant phenomic datasets with MIAPPE 1.1
Enabling reusability of plant phenomic datasets with MIAPPE 1.1
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DOI：
10.1111/nph.16544
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发表时间：
2020-04-25
期刊：
影响因子：
9.4
通讯作者：
Pommier, Cyril
中科院分区：
文献类型：
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作者：
Papoutsoglou, Evangelia A.;Faria, Daniel;Pommier, Cyril
实现数据重用和知识发现在现代科学中越来越重要，需要努力实现数据发布实践的标准化。由于其复杂性和异质性，这在植物表型领域尤其具有挑战性。我们发布了MIAPPE 1.1版本，它在覆盖范围上增强了现有的MIAPPE标准，在结构上支持多年生植物，通过明确的数据模型，通过定义和实例来清晰地支持多年生植物。我们通过使用MIAPPE 1.1以一系列不同的格式表达几个不同的表型实验，来评估MIAPPE 1.1，以展示它的适用性和不同实现之间的互操作性。此外，其中一个数据集无法在MIAPPE 1.0中描述的事实证明了覆盖范围的扩大。MIAPPE 1.1标志着在实现植物表型数据可重用性方面迈出了重要的一步，这要归功于它的扩展覆盖范围，特别是其数据模型的形式化，这有助于以不同的格式实施它。社区反馈对这一发展至关重要，并将是确保采用该标准的关键部分。
Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity.We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples.We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0.MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.