The genome of the American groundhog, Marmota monax.
The genome of the American groundhog, Marmota monax.
复制标题
DOI：
10.12688/f1000research.25970.1
复制
发表时间：
2020
期刊：
影响因子：
--
通讯作者：
Salzberg SL
中科院分区：
文献类型：
--
作者：
Puiu D;Zimin A;Shumate A;Ge Y;Qiu J;Bhaskaran M;Salzberg SL
我们对北美土拨鼠的基因组进行了测序，土拨鼠也被称为土拨鼠。我们的测序策略包括由Pacific Biosciences和Oxford Nanopore仪器生成的短、高质量Illumina读数加上长读数的组合。组合数据的组装产生总长度为2.74 Gbp的基因组，其中N50重叠群大小为1，094，236 bp。为了注释基因组，我们绘制了来自另一个M。monax基因组和密切相关的高山旱獭，旱獭，到我们的组装，导致20,559注释的蛋白质编码基因和28,135转录本。基因组组装和注释可在基因库中获得，编号为BioProject PRJNA 587092。
We sequenced the genome of the North American groundhog, Marmota monax, also known as the woodchuck. Our sequencing strategy included a combination of short, high-quality Illumina reads plus long reads generated by both Pacific Biosciences and Oxford Nanopore instruments. Assembly of the combined data produced a genome of 2.74 Gbp in total length, with an N50 contig size of 1,094,236 bp. To annotate the genome, we mapped the genes from another M. monax genome and from the closely related Alpine marmot, Marmota marmota, onto our assembly, resulting in 20,559 annotated protein-coding genes and 28,135 transcripts. The genome assembly and annotation are available in GenBank under BioProject PRJNA587092.