Fast and efficient searching of biological data resources-using EB-eye
Fast and efficient searching of biological data resources-using EB-eye
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DOI：
10.1093/bib/bbp065
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发表时间：
2010-07-01
影响因子：
9.5
通讯作者：
Lopez, Rodrigo
中科院分区：
文献类型：
--
作者：
Valentin, Franck;Squizzato, Silvano;Lopez, Rodrigo
EB-EYE是一种快速高效的搜索引擎，可轻松且均匀地访问EMBL-EBI托管的生物数据资源。当前，用户可以从62个不同的数据集中访问信息，涵盖约4亿个条目。 EB-EYE中表示的数据资源包括：基因组和蛋白质组学水平的核苷酸和蛋白质序列，从化学物质到宏观分子复合物，基因表达实验，二进制分子相互作用以及反应图和反应图模型的结构，功能分类，生物学本体和综合文献库，涵盖生物医学和相关知识产权。可以通过Web访问EB-EYE，也可以使用SOAP Web服务接口进行编程。这样可以利用其搜索和检索功能在工作流程和分析管道中。 Eb-Eye是现有生物搜索和检索引擎的新型替代品。在本文中，我们详细描述了如何利用其强大功能。
The EB-eye is a fast and efficient search engine that provides easy and uniform access to the biological data resources hosted at the EMBL-EBI. Currently, users can access information from more than 62 distinct datasets covering some 400 million entries. The data resources represented in the EB-eye include: nucleotide and protein sequences at both the genomic and proteomic levels, structures ranging from chemicals to macro-molecular complexes, gene-expression experiments, binary level molecular interactions as well as reaction maps and pathway models, functional classifications, biological ontologies, and comprehensive literature libraries covering the biomedical sciences and related intellectual property. The EB-eye can be accessed over the web or programmatically using a SOAP Web Services interface. This allows its search and retrieval capabilities to be exploited in workflows and analytical pipe-lines. The EB-eye is a novel alternative to existing biological search and retrieval engines. In this article we describe in detail how to exploit its powerful capabilities.