MinoTour, real-time monitoring and analysis for Nanopore Sequencers
MinoTour, real-time monitoring and analysis for Nanopore Sequencers
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MinoTour，纳米孔测序仪的实时监测和分析
DOI：
10.1101/2021.09.10.459783
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发表时间：
2021
期刊：
影响因子：
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通讯作者：
Munro R
中科院分区：
文献类型：
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作者：
Munro R
SummaryminoTour为Oxford Nanopore Technology测序仪提供了实验室信息管理系统（LIMS），可永久提供实时指标和分析以供审查。独特的实时自动化分析的集成可以减少回答生物学问题所需的时间，包括在运行过程中对序列进行映射和分类。实时序列数据需要新的分析方法，这些方法不需要等待运行完成，minoTour提供了一个框架，允许用户利用这些功能。可用性和实施源代码和文档可在https://github.com/LooseLab/minotourcli和https://github.com/LooseLab/minotourapp上获得。Docker镜像可从https：//hub.docker.com/r/adoni5/获得，并可使用https://github.com/LooseLab/minotour-docker上的预配置docker-compose脚本安装。一个示例服务器可在http://137.44.59.170.Supplementary信息中获得补充数据可在Bioinformaticsonline中获得。
SummaryminoTour offers a Laboratory Informations Management System (LIMS) system for Oxford Nanopore Technology sequencers, with real-time metrics and analysis available permanently for review. Integration of unique real-time automated analysis can reduce the time required to answer biological questions, including mapping and classification of sequence while a run is in progress. Real-time sequence data require new methods of analysis which do not wait for the completion of a run and minoTour provides a framework to allow users to exploit these features.Availability and implementationSource code and documentation are available at https://github.com/LooseLab/minotourcli and https://github.com/LooseLab/minotourapp. Docker images are available from https://hub.docker.com/r/adoni5/, and can be installed using a preconfigured docker-compose script at https://github.com/LooseLab/minotour-docker. An example server is available at http://137.44.59.170.Supplementary informationSupplementary data are available atBioinformaticsonline.