MyMiner: a web application for computer-assisted biocuration and text annotation
MyMiner: a web application for computer-assisted biocuration and text annotation
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DOI：
10.1093/bioinformatics/bts435
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发表时间：
2012-09-01
期刊：
影响因子：
5.8
通讯作者：
Marcelle, Christophe
中科院分区：
文献类型：
--
作者：
Salgado, David;Krallinger, Martin;Marcelle, Christophe
动机：科学文献的指数增长导致了大量的非结构化自然语言数据，这些数据无法通过生物信息学工具直接处理。这些工具通常需要结构化的数据，通常是通过繁琐的手动文献整理过程生成的。在这里，我们提出了MyMiner，一个免费的和用户友好的文本注释工具，旨在协助进行主要的biocuration任务，并提供标记的数据，为文本挖掘系统的发展。MyMiner允许根据用户指定的类别以及预定义的生物实体轻松分类和标记文本数据。该应用程序的实用性和效率已经过测试，用于各种研究主题的一系列现实生活中的注释场景。
Motivation: The exponential growth of scientific literature has resulted in a massive amount of unstructured natural language data that cannot be directly handled by means of bioinformatics tools. Such tools generally require structured data, often generated through a cumbersome process of manual literature curation. Herein, we present MyMiner, a free and user-friendly text annotation tool aimed to assist in carrying out the main biocuration tasks and to provide labelled data for the development of text mining systems. MyMiner allows easy classification and labelling of textual data according to user-specified classes as well as predefined biological entities. The usefulness and efficiency of this application have been tested for a range of real-life annotation scenarios of various research topics.