GoSh: a web-based database for goat and sheep EST sequences
GoSh: a web-based database for goat and sheep EST sequences
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DOI：
10.1093/bioinformatics/btm063
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发表时间：
2007-04-15
期刊：
影响因子：
5.8
通讯作者：
Mariani, Paola
中科院分区：
文献类型：
--
作者：
Caprera, Andrea;Lazzari, Barbara;Mariani, Paola
GoSh数据库是58990个Capra hircus和Ovis aries表达序列标签的集合。准备了perl管道来处理序列，并在MySQL数据库中收集数据。基于php的web界面允许浏览和查询数据库。进行了假定的单核苷酸多态性（SNP）检测和重复序列搜索，并提供了外部相关资源的链接。在三个不同的数据库中对序列进行了注释，并实现了一种算法来创建检索到的同源本体在基因本体类别中的分布统计。GoSh数据库是与山羊和绵羊表达基因相关的数据和链接的存储库。
The GoSh database is a collection of 58 990 Capra hircus and Ovis aries expressed sequence tags. A perl pipeline was prepared to process sequences, and data were collected in a MySQL database. A PHP-based web interface allows browsing and querying the database. Putative single nucleotide polymorphism (SNP) detection, as well as search to repeats were performed, and links to external related resources were provided. Sequences were annotated against three different databases and an algorithm was implemented to create statistics of the distribution of retrieved homologous ontologies in the Gene Ontology categories. The GoSh database is a repository of data and links related to goat and sheep expressed genes.