Open source system for analyzing, validating, and storing protein identification data
Open source system for analyzing, validating, and storing protein identification data
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DOI：
10.1021/pr049882h
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发表时间：
2004-11-01
影响因子：
4.4
通讯作者：
Beavis, RC
中科院分区：
文献类型：
--
作者：
Craig, R;Cortens, JP;Beavis, RC
本文介绍了一个开源系统，用于分析，储存和验证从串联质谱法获得的蛋白质组学信息。它基于数据分析服务器，用户界面和关系数据库的组合。该数据库旨在存储搜索和检索从公开可用数据分析服务器获得的数据所需的最小信息。总体而言，该系统被称为全球蛋白质组机（GPM）。该系统的组件已作为开源开发项目提供。已经建立了一个公开可用的系统，该系统由一组数据分析服务器和一个主要数据库服务器组成。
This paper describes an open-source system for analyzing, storing, and validating proteomics information derived from tandem mass spectrometry. It is based on a combination of data analysis servers, a user interface, and a relational database. The database was designed to store the minimum amount of information necessary to search and retrieve data obtained from the publicly available data analysis servers. Collectively, this system was referred to as the Global Proteome Machine (GPM). The components of the system have been made available as open source development projects. A publicly available system has been established, comprised of a group of data analysis servers and one main database server.