MamMiBase:: a mitochondrial genome database for mammalian phylogenetic studies
MamMiBase:: a mitochondrial genome database for mammalian phylogenetic studies
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DOI：
10.1093/bioinformatics/bti326
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发表时间：
2005-05-15
期刊：
影响因子：
5.8
通讯作者：
Russo, CAM
中科院分区：
文献类型：
--
作者：
de Vasconcelos, ATR;Guimaraes, ACR;Russo, CAM
哺乳动物线粒体基因组数据库MamMiBase是哺乳动物物种完整线粒体基因组序列的关系数据库。该数据库是有用的系统发育分析，因为它允许一个现成的检索的核苷酸和氨基酸的个别比对，在三个不同的格式（NEXUS PAUP程序，MEGA程序和PHYLIP程序）的13个蛋白质编码线粒体基因。用户可以基于其参数值下载对他/她有用的序列，所述参数值例如序列长度、p-距离、碱基含量、转换颠换率、伽马，其也由MamMiBase给出。一个简单的系统发育树（Jukes Cantor距离的邻接树）也可供下载，用于参数计算和其他简单的任务。
MamMiBase, the mammalian mitochondrial genome database, is a relational database of complete mitochondrial genome sequences of mammalian species. The database is useful for phylogenetic analysis, since it allows a ready retrieval of nucleotide and aminoacid individual alignments, in three different formats (NEXUS for PAUP program, for MEGA program and for PHYLIP program) of the 13 protein coding mitochondrial genes. The user may download the sequences that are useful for him/her based on their parameters values, such as sequence length, p-distances, base content, transition transversion ratio, gamma, which are also given by MamMiBase. A simple phylogenetic tree (neighbor-joining tree with Jukes Cantor distance) is also available for download, useful for parameter calculations and other simple tasks.