DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data
DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data
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DOI：
10.1093/bioinformatics/btt763
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发表时间：
2014-04-15
期刊：
影响因子：
5.8
通讯作者：
Estoup, Arnaud
中科院分区：
文献类型：
--
作者：
Cornuet, Jean-Marie;Pudlo, Pierre;Estoup, Arnaud
动机：DIYABC是一个综合分析人口历史的软件包，使用近似贝叶斯计算DNA多态性数据。2.0版实现了许多新功能和分析方法。它允许（i）除了微卫星和DNA序列数据之外，在大量基因座处的单核苷酸多态性数据的分析，（ii）使用对汇总统计的线性判别分析的有效贝叶斯模型选择，以及（iii）多个后处理分析的连续启动。DIYABC v2.0还包括一个用户友好的图形界面，具有各种新选项。它可以在三种操作系统上运行：GNU/Linux、Microsoft Windows和Apple OS X。
Motivation: DIYABC is a software package for a comprehensive analysis of population history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 implements a number of new features and analytical methods. It allows (i) the analysis of single nucleotide polymorphism data at large number of loci, apart from micro-satellite and DNA sequence data, (ii) efficient Bayesian model choice using linear discriminant analysis on summary statistics and (iii) the serial launching of multiple post-processing analyses. DIYABC v2.0 also includes a user-friendly graphical interface with various new options. It can be run on three operating systems: GNU/Linux, Microsoft Windows and Apple Os X.