MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis.

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis.
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DOI:
10.1186/gb-2008-9-7-r118
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发表时间:
2008
期刊:
影响因子:
12.3
通讯作者:
Yeung KY
Yeung KY
中科院分区:
生物学1区
文献类型:
--
作者:
Chu VT;Gottardo R;Raftery AE;Bumgarner RE;Yeung KY

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MeV+R为用户提供了对传统的用R编写的命令行驱动工具的点击式访问。我们介绍了MeV+R,它是JAVA MultiExperiment Viewer程序与Bioconductor软件包的集成。MultiExperiment Viewer和R的这种集成很容易扩展到其他R包,并为用户提供点按式访问传统的用R编写的命令行驱动工具。我们展示了使用MultiExperiment Viewer作为Bioconductor应用程序在微阵列数据分析中的图形用户界面的能力,通过合并三个Bioconductor包,RAMA, BRIDGE和iterativeBMA。
MeV+R provides users with point-and-click access to traditionally command-line-driven tools written in R. We present MeV+R, an integration of the JAVA MultiExperiment Viewer program with Bioconductor packages. This integration of MultiExperiment Viewer and R is easily extensible to other R packages and provides users with point and click access to traditionally command line driven tools written in R. We demonstrate the ability to use MultiExperiment Viewer as a graphical user interface for Bioconductor applications in microarray data analysis by incorporating three Bioconductor packages, RAMA, BRIDGE and iterativeBMA.
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