JBrowse: a dynamic web platform for genome visualization and analysis.
JBrowse: a dynamic web platform for genome visualization and analysis.
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DOI：
10.1186/s13059-016-0924-1
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发表时间：
2016-04-12
期刊：
影响因子：
12.3
通讯作者：
Holmes IH
中科院分区：
文献类型：
--
作者：
Buels R;Yao E;Diesh CM;Hayes RD;Munoz-Torres M;Helt G;Goodstein DM;Elsik CG;Lewis SE;Stein L;Holmes IH
JBrowse是一个快速且功能齐全的基因组浏览器，使用JavaScript和HTML5构建。它很容易嵌入到网站或应用程序中，但也可以作为一个独立的网页。速度和可伸缩性的整体改进伴随着特定的增强，支持大型轨道集上的复杂交互式查询。使用插件框架可以很容易地添加分析功能;轨道的大多数视觉方面也可以自定义，沿着单击、鼠标悬停、菜单和弹出框。JBrowse还可以用于离线浏览本地注释文件，并生成高分辨率的图形以供发布。JBrowse是一个成熟的适合基因组可视化和分析的Web应用程序。
JBrowse is a fast and full-featured genome browser built with JavaScript and HTML5. It is easily embedded into websites or apps but can also be served as a standalone web page. Overall improvements to speed and scalability are accompanied by specific enhancements that support complex interactive queries on large track sets. Analysis functions can readily be added using the plugin framework; most visual aspects of tracks can also be customized, along with clicks, mouseovers, menus, and popup boxes. JBrowse can also be used to browse local annotation files offline and to generate high-resolution figures for publication. JBrowse is a mature web application suitable for genome visualization and analysis.