gwasrapidd: an R package to query, download and wrangle GWAS catalog data.
gwasrapidd: an R package to query, download and wrangle GWAS catalog data.
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DOI：
10.1093/bioinformatics/btz605
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发表时间：
2020-01-15
期刊：
影响因子：
--
通讯作者：
Maia AT
中科院分区：
文献类型：
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作者：
Magno R;Maia AT
国家人类基因组研究所已发布的全基因组关联研究 (GWAS) 目录收集、整理并提供了 7100 多项研究的数据。最近开发的 GWAS 目录表征状态传输 (REST) 应用程序编程接口 (API) 是允许以编程方式访问此资源的唯一方法。在这里，我们描述 gwasrapidd，一个 R 包，它为 GWAS Catalog REST API 提供第一个客户端接口，代表服务器端组件的重要软件对应项。 gwasrapidd 使用户能够利用全面的生物信息学分析工具快速检索、过滤和集成数据，这对于那些研究风险位点功能表征的人来说尤其重要。 gwasrapidd 可在 MIT 许可证下免费使用，并且可以从 https://github.com/ramiromagno/gwasrapidd 访问。 补充数据可在生物信息学在线获取。
The National Human Genome Research Institute Catalog of Published Genome-Wide Association Studies (GWAS) Catalog has collected, curated and made available data from over 7100 studies. The recently developed GWAS Catalog representational state transfer (REST) application programming interface (API) is the only method allowing programmatic access to this resource. Here, we describe gwasrapidd, an R package that provides the first client interface to the GWAS Catalog REST API, representing an important software counterpart to the server-side component. gwasrapidd enables users to quickly retrieve, filter and integrate data with comprehensive bioinformatics analysis tools, which is particularly critical for those looking into functional characterization of risk loci. gwasrapidd is freely available under an MIT License, and can be accessed from https://github.com/ramiromagno/gwasrapidd. Supplementary data are available at Bioinformatics online.
影响因子：
14.9
作者：
Welter D;MacArthur J;Morales J;Burdett T;Hall P;Junkins H;Klemm A;Flicek P;Manolio T;Hindorff L;Parkinson H
通讯作者：
Parkinson H