GenCLiP 3: mining human genes' functions and regulatory networks from PubMed based on co-occurrences and natural language processing
GenCLiP 3: mining human genes' functions and regulatory networks from PubMed based on co-occurrences and natural language processing
复制标题
GenCLiP 3：基于共现和自然语言处理，从 PubMed 挖掘人类基因的功能和调控网络。
DOI：
10.1093/bioinformatics/btz807
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发表时间：
2020-03-15
期刊：
影响因子：
5.8
通讯作者：
Huang, Zhong-Xi
中科院分区：
文献类型：
--
作者：
Wang, Jia-Hong;Zhao, Ling-Feng;Huang, Zhong-Xi
摘要：我们提出了一个网络服务器 GenCLiP 3，它是 GenCLiP 2.0 的更新版本，用于增强对人类基因功能和调控网络的分析，具有以下改进：（i）从整个 PubMed 数据库中准确识别具有极性和方向性的分子相互作用； (ii) 支持布尔搜索，可定制多词搜索，快速检索功能相关基因； (iii) 通过新的评分方法加强基因和关键词之间的关联； (iv) PubMed FTP 文献发布后的每日更新。
A Summary: We present a web server, GenCLiP 3, which is an updated version of GenCLiP 2.0 to enhance analysis of human gene functions and regulatory networks, with the following improvements: (i) accurate recognition of molecular interactions with polarity and directionality from the entire PubMed database; (ii) support for Boolean search to customize multiple-term search and to quickly retrieve function-related genes; (iii) strengthened association between gene and keyword by a new scoringmethod; and (iv) daily updates following literature release at PubMed FTP.