D3GB: An Interactive Genome Browser for R, Python, and WordPress
D3GB: An Interactive Genome Browser for R, Python, and WordPress
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DOI：
10.1089/cmb.2016.0213
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发表时间：
2017-05-01
影响因子：
1.7
通讯作者：
Prieto, Carlos
中科院分区：
文献类型：
--
作者：
Barrios, David;Prieto, Carlos
基因组浏览器不仅可用于显示最终结果，还可用于改进分析方案、测试数据质量和生成结果草稿。它集成在分析管道中，可以优化参数，从而获得更好的结果。促进基因组浏览器的创建和使用的新发展可能有助于改善分析结果并支持基因组数据的快速可视化。D3基因组浏览器是一个交互式的基因组浏览器，可以很容易地集成到分析协议中，并在Web上共享。它作为R包，Python模块和WordPress插件分发，以促进其在管道中的集成和平台功能的利用。它与流行的数据格式（例如GenBank、GFF、BED、FASTA和VCF）兼容，并支持使用Web浏览器探索基因组数据。
Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to better results. New developments that facilitate the creation and utilization of genome browsers could contribute to improving analysis results and supporting the quick visualization of genomic data. D3 Genome Browser is an interactive genome browser that can be easily integrated in analysis protocols and shared on the Web. It is distributed as an R package, a Python module, and a WordPress plugin to facilitate its integration in pipelines and the utilization of platform capabilities. It is compatible with popular data formats such as GenBank, GFF, BED, FASTA, and VCF, and enables the exploration of genomic data with a Web browser.