CyanoBase, a WWW database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
CyanoBase, a WWW database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
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DOI：
10.1093/nar/26.1.63
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发表时间：
1998-01-01
影响因子：
14.9
通讯作者：
Tabata, S
中科院分区：
文献类型：
--
作者：
Nakamura, Y;Kaneko, T;Tabata, S
氰基(http://www.kazusa.or.jp/cyano/)is)是一种包含聚球藻基因组信息的数据库。菌株PCC6803。它为从该基因组的整个核苷酸序列推导出的3168个蛋白质基因中的每一个提供了注释。关于基因组的信息可以通过三个不同的菜单直接访问：可点击的基因组物理图谱、基因分类列表和关键字搜索菜单，所有这些都可以从数据库的主页访问。基因注释的入口页面包含以下信息：基因在基因组上的位置、基因的核苷酸和推导的氨基酸序列、相似性搜索的结果以及根据其功能对推断的基因产物进行分类。这个页面有指向当地物理图谱和基因分类列表的反向链接，因此可以根据相关基因在基因组中的位置及其功能进行搜索。此外，CyanoBase的主页提供了查询序列和整个基因组序列之间的相似性搜索以及关键字搜索的引擎，此外还提供了许多指向包含相关信息的页面的链接。
CyanoBase (http://www.kazusa.or.jp/cyano/)is a database containing genomic information on the cyanobacterium Synechocystis sp. strain PCC6803. It furnishes an annotation to each of the 3168 protein genes deduced from the entire nucleotide sequence of this genome. Information on the genome can be directly accessed through three different menus: a clickable physical map of the genome, a gene classification list, and a keyword search menu, all of which are accessible from the main page of the database. The entry page for a gene annotation contains the following information: the location of the gene on the genome, the nucleotide and deduced amino acid sequence of the gene, the result of a similarity search, and the classification of the deduced gene product according to its function. This page has reverse-links to the local physical map and gene classification list so that relevant genes can be searched in terms of their location on the genome and their function. In addition, the main page of CyanoBase provides engines for similarity searches between a query sequence and the entire genome sequence and for keyword searches, in addition to numerous links to pages containing related information.