IMPROVED METHODS FOR BUILDING PROTEIN MODELS IN ELECTRON-DENSITY MAPS AND THE LOCATION OF ERRORS IN THESE MODELS

IMPROVED METHODS FOR BUILDING PROTEIN MODELS IN ELECTRON-DENSITY MAPS AND THE LOCATION OF ERRORS IN THESE MODELS
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DOI:
10.1107/s0108767390010224
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发表时间:
1991-03-01
期刊:
ACTA CRYSTALLOGRAPHICA SECTION A
影响因子:
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通讯作者:
KJELDGAARD, M
KJELDGAARD, M
中科院分区:
其他
文献类型:
--
作者:
JONES, TA;ZOU, JY;KJELDGAARD, M

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图谱解释仍然是解决大分子结构的关键步骤。 在这个早期阶段引入的错误可能在整个晶体学细化过程中持续存在,并导致不正确的结构。 通常引用的晶体学残余通常不能很好地描述模型的质量。 战略和工具描述,有助于缓解这个问题。 这些简化了模型构建过程,量化了每个残基基础上的模型拟合优度,并定位了肽和侧链构象中可能的错误。
Map interpretation remains a critical step in solving the structure of a macromolecule. Errors introduced at this early stage may persist throughout crystallographic refinement and result in an incorrect structure. The normally quoted crystallographic residual is often a poor description for the quality of the model. Strategies and tools are described that help to alleviate this problem. These simplify the model-building process, quantify the goodness of fit of the model on a per-residue basis and locate possible errors in peptide and side-chain conformations.