Alignment of multiple DNA and protein sequence data.

Alignment of multiple DNA and protein sequence data.
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多个 DNA 和蛋白质序列数据的比对。

DOI:
10.1093/bioinformatics/4.1.213
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发表时间:
1988
期刊:
Computer applications in the biosciences : CABIOS
影响因子:
--
通讯作者:
Friedemann,T
Friedemann,T
中科院分区:
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文献类型:
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作者:
Friedemann,T

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在分子生物学领域中,对基于序列相似性推断同源性的多序列比对程序的需求日益增长。前两个程序PROT3和ALN3/ALP3使用Needleman-Wunsch算法(1970)的扩展来比较两个序列。在PROT3中,Murata et al.(1985)已经通过使用两个矩阵而不是一个矩阵来规避了从五次幂到三次幂的过长计算时间的问题。Gotoh(1986)在他的ALN3/ALP3程序中,使用了Taylor(1986)的回溯过程的修改,使回溯过程更有效地工作。
There is a growing need in the field of molecular biology for multiple sequence alignment programs that infer homology based on sequence similarity. Seven multiple sequence alignment programs have been obtained from the respective authors and are presently available to members of the BIONET™ community.The first two programs, PROT3 and ALN3/ALP3, use extensions of the Needleman—Wunsch algorithm (1970) for comparing two sequences. In PROT3, Murata et al.(1985) have circumvented the problem of prohibitively long computation time from the fifth power to the third power by using two matrices instead of one. Gotoh (1986), in his ALN3/ALP3 program, uses a modification of the traceback procedure of Taylor (1986) that makes the traceback procedure work more efficiently.
DOI: 10.1093/bioinformatics/15.3.203
发表时间: 1999-03-01
期刊: BIOINFORMATICS
影响因子: 5.8
作者:
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通讯作者: Reinert, K
DOI: 10.1093/nar/22.22.4673
发表时间: 1994-11-11
影响因子: 14.9
作者:
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通讯作者: GIBSON, TJ
DOI: 10.1007/3-540-63220-4_58
发表时间: 1997
期刊: Bioinformatics
影响因子: 5.8
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通讯作者: Saïd Abdeddaïm