Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
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DOI：
10.1093/nar/gkh033
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发表时间：
2004-01-01
影响因子：
14.9
通讯作者：
Cherry, JM
中科院分区：
文献类型：
--
作者：
Christie, KR;Weng, S;Cherry, JM
SacCharomyces基因组数据库（SGD； http://www.yeastgenome.org/），这是一个科学数据库的分子生物学和酿酒酵母的分子生物学和遗传学，最近开发了几种新资源，允许在某些信息上进行比较和整合信息的比较和整合。全基因组量表，使用户不仅可以找到有关单个基因的详细信息，而且还可以在具有共同特征和跨不同物种的基因组之间建立连接。真菌比对查看器显示了来自多个真菌基因组的序列对齐，而序列相似性查询工具显示每种S. cerevisiae蛋白的PSI-blast比对与来自任何序列中的任何物种的相似蛋白质的PSI-blast对准，其序列中包含非冗余（NR）蛋白质数据中的蛋白质位于NCBI。酵母生化途径工具通过其在代谢中的共同作用整合基因组，并以图形形式显示新陈代谢途径。最后，查找染色体功能搜索接口提供了一种通用工具，用于查询SGD中多种类型的信息。
The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/), a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, has recently developed several new resources that allow the comparison and integration of information on a genome-wide scale, enabling the user not only to find detailed information about individual genes, but also to make connections across groups of genes with common features and across different species. The Fungal Alignment Viewer displays alignments of sequences from multiple fungal genomes, while the Sequence Similarity Query tool displays PSI-BLAST alignments of each S.cerevisiae protein with similar proteins from any species whose sequences are contained in the non-redundant (nr) protein data set at NCBI. The Yeast Biochemical Pathways tool integrates groups of genes by their common roles in metabolism and displays the metabolic pathways in a graphical form. Finally, the Find Chromosomal Features search interface provides a versatile tool for querying multiple types of information in SGD.