UpSetR: an R package for the visualization of intersecting sets and their properties
UpSetR: an R package for the visualization of intersecting sets and their properties
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DOI：
10.1093/bioinformatics/btx364
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发表时间：
2017-09-15
期刊：
影响因子：
5.8
通讯作者：
Gehlenborg, Nils
中科院分区：
文献类型：
--
作者：
Conway, Jake R.;Lex, Alexander;Gehlenborg, Nils
动机：维恩图和欧拉图是一种流行的解决方案，但不足以定量可视化集合交叉口。需要一种可伸缩的替代维恩图和欧拉图来可视化相交集及其属性。结果：我们开发了UpSetR，这是一个开源的R包，它采用可扩展的基于矩阵的可视化来显示集合的交叉点、它们的大小和其他属性。可用性和实现：UpSetR可在https://github.com/hms-dbmi/UpSetR/上获得，并根据MIT许可发布。一个Shiny的应用程序可在https://gehlenborglab.shinyapps.io/upsetr/.Contact: nils@hms.harvard.eduSupplementary获取信息：补充数据可在Bioinformatics在线获取。
Motivation: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed.Results: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties.Availability and implementation: UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/.Contact: nils@hms.harvard.eduSupplementary information: Supplementary data are available at Bioinformatics online.