An Introduction to the EcoTroph R Package: Analyzing Aquatic Ecosystem Trophic Networks

An Introduction to the EcoTroph R Package: Analyzing Aquatic Ecosystem Trophic Networks
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DOI:
10.32614/rj-2013-010
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发表时间:
2013
期刊:
R J.
影响因子:
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通讯作者:
Mathieu Colléter;Jérôme Guitton;D. Gascuel
Mathieu Colléter;Jérôme Guitton;D. Gascuel
中科院分区:
其他
文献类型:
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作者:
Mathieu Colléter;Jérôme Guitton;D. Gascuel

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水生生态系统建模的最新进展特别侧重于通过营养动力学模型进行营养网络分析。我们在这里展示了一个专门用于最近开发的模型EcoTroph的R包。该模型能够分析水生生态网络和渔业的相关影响。它可以通过著名的Ecopath与Ecosim软件中的插件或通过Excel表格中的实现来提供。我们开发的R软件包简化了对EcoTroph模型的访问,并在两个广泛使用的软件Ecopath和R之间提供了一个新的接口。
Recent advances in aquatic ecosystem modelling have particularly focused on trophic network analysis through trophodynamic models. We present here a R package devoted to a recently developed model, EcoTroph. This model enables the analysis of aquatic ecological networks and the related impacts of fisheries. It was available through a plug-in in the well-known Ecopath with Ecosim software or through implementations in Excel sheets. The R package we developed simplifies the access to the EcoTroph model and offers a new interfacing between two widely used software, Ecopath and R.