Initiating the Mollusk Genomics Annotation Community: Toward Creating the Complete Curated Gene-set of the Japanese Pearl Oyster, Pinctada fucata
Initiating the Mollusk Genomics Annotation Community: Toward Creating the Complete Curated Gene-set of the Japanese Pearl Oyster, Pinctada fucata
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DOI：
10.2108/zsj.30.794
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发表时间：
2013-10-01
影响因子：
0.9
通讯作者：
Endo, Kazuyoshi
中科院分区：
文献类型：
--
作者：
Kawashima, Takeshi;Takeuchi, Takeshi;Endo, Kazuyoshi
日本珍珠贝的基因组序列于2012年2月公布，这是第一个软体动物基因组草图。为了策划基因组草图组装和对预测的基因模型进行注释，在冲绳和东京举行了两次注释简报会。到目前为止，已经对761个基因进行了调查和整理。在三崎海洋生物站举行了筹备会议和情况通报会。这四个事件与序列解码项目一起，促进了第一系列基因注释的进行。到目前为止，Jamboree参与者中的基因组注释员在注解系统中添加了22个功能类别。其中，17个包含在通用基因本体论中。其他五类是软体动物生物学所特有的，包括生物矿化和酸性蛋白质。我们最新版本的基因模型中共有731个基因被注释并归类为这22个类别。所得数据将为今后对该物种的基因组分析以及软体动物之间的比较分析提供有用的参考。
The genome sequence of the Japanese pearl oyster, the first draft genome from a mollusk, was published in February 2012. In order to curate the draft genome assemblies and annotate the predicted gene models, two annotation Jamborees were held in Okinawa and Tokyo. To date, 761 genes have been surveyed and curated. A preparatory meeting and a debriefing were held at the Misaki Marine Biological Station before and after the Jamborees. These four events, in conjunction with the sequence-decoding project, have facilitated the first series of gene annotations. Genome annotators among the Jamboree participants added 22 functional categories to the annotation system to date. Of these, 17 are included in Generic Gene Ontology. The other five categories are specific to molluskan biology, such as "Byssus Formation" and "Shell Formation", including Biomineralization and Acidic Proteins. A total of 731 genes from our latest version of gene models are annotated and classified into these 22 categories. The resulting data will serve as a useful reference for future genomic analyses of this species as well as comparative analyses among mollusks.