The mzIdentML data standard for mass spectrometry-based proteomics results.

The mzIdentML data standard for mass spectrometry-based proteomics results.
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DOI:
10.1074/mcp.m111.014381
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发表时间:
2012-07
期刊:
Molecular & cellular proteomics : MCP
影响因子:
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通讯作者:
Creasy D
Creasy D
中科院分区:
其他
文献类型:
--
作者:
Jones AR;Eisenacher M;Mayer G;Kohlbacher O;Siepen J;Hubbard SJ;Selley JN;Searle BC;Shofstahl J;Seymour SL;Julian R;Binz PA;Deutsch EW;Hermjakob H;Reisinger F;Griss J;Vizcaíno JA;Chambers M;Pizarro A;Creasy D

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我们报道了mzIdentML的发布,这是由蛋白质组学标准倡议设计的多肽和蛋白质鉴定数据的交换标准。该格式是由蛋白质组学标准倡议与仪器和软件供应商以及蛋白质组学主要开源项目的开发商合作开发的。已经开发了软件实现来实现从大多数流行的专有和开放源码格式的转换,mzIdentML很快将得到主要公共存储库的支持。这些发展使蛋白质组学科学家能够开始使用交换和发布数据集的标准来支持出版物,并为生物信息学组织和商业软件供应商提供了一个稳定的平台,以使用单一文件格式的鉴定数据。
We report the release of mzIdentML, an exchange standard for peptide and protein identification data, designed by the Proteomics Standards Initiative. The format was developed by the Proteomics Standards Initiative in collaboration with instrument and software vendors, and the developers of the major open-source projects in proteomics. Software implementations have been developed to enable conversion from most popular proprietary and open-source formats, and mzIdentML will soon be supported by the major public repositories. These developments enable proteomics scientists to start working with the standard for exchanging and publishing data sets in support of publications and they provide a stable platform for bioinformatics groups and commercial software vendors to work with a single file format for identification data.