CONSEL: for assessing the confidence of phylogenetic tree selection
CONSEL: for assessing the confidence of phylogenetic tree selection
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DOI：
10.1093/bioinformatics/17.12.1246
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发表时间：
2001-12-01
期刊：
影响因子：
5.8
通讯作者：
Hasegawa, M
中科院分区：
文献类型：
--
作者：
Shimodaira, H;Hasegawa, M
CONSEL是一个通过给出树的p值来评估树选择置信度的程序。该程序的主要推力是使用多尺度自举技术计算近似无偏（AU）检验的p值。这个p值比其他传统的p值，如Bootstrap概率（BP）、Kishino-Hasegawa （KH）检验、Shimodaira-Hasegawa （SH）检验和加权Shimodaira-Hasegawa （WSH）检验，偏差更小。CONSEL从系统发育程序包（如Molphy， PAML和PAUP*）的输出计算所有这些p值。此外，CONSEL适用于bp可用的各种问题。
CONSEL is a program to assess the confidence of the tree selection by giving the p-values for the trees. The main thrust of the program is to calculate the p-value of the Approximately Unbiased (AU) test using the multi-scale bootstrap technique. This p-value is less biased than the other conventional p-values such as the Bootstrap Probability (BP), the Kishino-Hasegawa (KH) test, the Shimodaira-Hasegawa (SH) test, and the Weighted Shimodaira-Hasegawa (WSH) test. CONSEL calculates all these p-values from the output of the phylogeny program packages such as Molphy, PAML, and PAUP*. Furthermore, CONSEL is applicable to a wide class of problems where the BPs are available.