RNAStructViz: graphical base pairing analysis
RNAStructViz: graphical base pairing analysis
复制标题
RNAStructViz：图形碱基配对分析
DOI：
10.1093/bioinformatics/btab197
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发表时间：
2021
期刊：
影响因子：
5.8
通讯作者：
Heitsch, Christine
中科院分区：
文献类型：
--
作者：
Schmidt, Maxie Dion;Kirkpatrick, Anna;Heitsch, Christine
我们提出了一种新的RNA二级结构分析的图形工具。其核心功能是能够在紧凑的标准化圆弧图布局中对给定序列的最多三个碱基配对配置进行视觉比较/对比。这是一个内置的CT风格的文件查看器和径向布局子结构查看器，直接链接到弧图窗口通过缩放选择工具的补充。其他功能包括计算一些数值信息，以及导出图像和数据以供以后使用的能力。这个工具应该是有用的研究人员寻求更好地了解RNA序列的结构选择之间的相似性和差异。可用性和实施https：github.com/gtDMMB/RNAStructViz/wiki。
SummaryWe present a new graphical tool for RNA secondary structure analysis. The central feature is the ability to visually compare/contrast up to three base pairing configurations for a given sequence in a compact, standardized circular arc diagram layout. This is complemented by a built-in CT-style file viewer and radial layout substructure viewer which are directly linked to the arc diagram window via the zoom selection tool. Additional functionality includes the computation of some numerical information, and the ability to export images and data for later use. This tool should be of use to researchers seeking to better understand similarities and differences between structural alternatives for an RNA sequence.Availability and implementationhttps://github.com/gtDMMB/RNAStructViz/wiki.