GLYDE - an expressive XML standard for the representation of glycan structure
GLYDE - an expressive XML standard for the representation of glycan structure
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DOI：
10.1016/j.carres.2005.09.019
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发表时间：
2005-12-30
影响因子：
3.1
通讯作者：
York, WS
中科院分区：
文献类型：
--
作者：
Sahoo, SS;Thomas, C;York, WS
由于分析和计算方法的改进，生成的糖组学数据量正在迅速增加。这种大型分布式数据集的关联和分析需要可扩展且灵活的表示标准，该标准也可以“被广泛的软件应用程序所理解”。基于 XML 的数据表示标准能够忠实地捕获聚糖部分的基本结构细节以及附加信息（例如数据来源），以帮助解释和使用聚糖数据，这将促进整个科学界的糖组学数据交换。为了满足这一需求，我们引入了 GLY can Data Exchange (GLYDE) 标准作为基于 XML 的表示格式，以实现糖组学数据的互操作性和交换。已经开发了一个在线工具（http://128.192.9.86/stargate/formatlndex.jsp），用于将其他表示形式转换为 GLYDE 格式。 (c) 2005 Elsevier Ltd. 保留所有权利。
The amount of glycomics data being generated is rapidly increasing as a result of improvements in analytical and computational methods. Correlation and analysis of this large, distributed data set requires an extensible and flexible representational standard that is also 'understood by a wide range of software applications. An XML-based data representation standard that faithfully captures essential structural details of a glycan moiety along with additional information (such as data provenance) to aid the interpretation and usage of glycan data, will facilitate the exchange of glycomics data across the scientific community. To meet this need, we introduce GLY can Data Exchange (GLYDE) standard as an XML-based representation format to enable interoperability and exchange of glycomics data. An online tool (http://128.192.9.86/stargate/formatlndex.jsp) for the conversion of other representations to GLYDE format has been developed. (c) 2005 Elsevier Ltd. All rights reserved.