Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
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DOI：
10.1093/nar/gkv1159
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发表时间：
2016-01-04
影响因子：
14.9
通讯作者：
Cannon SB
中科院分区：
文献类型：
--
作者：
Dash S;Campbell JD;Cannon EK;Cleary AM;Huang W;Kalberer SR;Karingula V;Rice AG;Singh J;Umale PE;Weeks NT;Wilkey AP;Farmer AD;Cannon SB
豆类信息系统（LIS），网址为http://legumeinfo.org，是豆类家族的基因组数据门户（GDP）。LIS提供了主要作物和模式豆类的遗传和基因组信息。有超过24种驯化的豆科植物，有许多专家在研究特定的物种，也有许多关于这些物种的gdp。LIS在过去三年中进行了重新设计，以便更好地整合作物和模型豆科植物的数据集，并更好地适应为特定豆科植物提供服务的专门gdp。为了整合数据集，LIS提供了基因组和地图查看器，保存了所有已测序的豆科植物物种之间的同源映射，并提供了一组基因家族，以便在豆科植物的同源和同源序列之间进行遍历。为了更好地适应其他专门的gdp， LIS尽可能使用开源的GMOD组件，并提倡使用通用的数据模板、格式、模式和接口，以便一个豆类研究社区收集的数据可以通过类似的接口和使用通用的api在所有豆类gdp中访问。这种豆类的联合模型是作为“豆类联盟”项目的一部分进行管理的（可通过http://legumefederation.org访问），该项目可以被认为是一个涵盖美国和其他豆类gdp的伞形项目。
Legume Information System (LIS), at http://legumeinfo.org, is a genomic data portal (GDP) for the legume family. LIS provides access to genetic and genomic information for major crop and model legumes. With more than two-dozen domesticated legume species, there are numerous specialists working on particular species, and also numerous GDPs for these species. LIS has been redesigned in the last three years both to better integrate data sets across the crop and model legumes, and to better accommodate specialized GDPs that serve particular legume species. To integrate data sets, LIS provides genome and map viewers, holds synteny mappings among all sequenced legume species and provides a set of gene families to allow traversal among orthologous and paralogous sequences across the legumes. To better accommodate other specialized GDPs, LIS uses open-source GMOD components where possible, and advocates use of common data templates, formats, schemas and interfaces so that data collected by one legume research community are accessible across all legume GDPs, through similar interfaces and using common APIs. This federated model for the legumes is managed as part of the ‘Legume Federation’ project (accessible via http://legumefederation.org), which can be thought of as an umbrella project encompassing LIS and other legume GDPs.