Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
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DOI：
10.1371/journal.pcbi.1009056
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发表时间：
2021-06
影响因子：
4.3
通讯作者：
Caporaso JG
中科院分区：
文献类型：
--
作者：
Dillon MR;Bolyen E;Adamov A;Belk A;Borsom E;Burcham Z;Debelius JW;Deel H;Emmons A;Estaki M;Herman C;Keefe CR;Morton JT;Oliveira RRM;Sanchez A;Simard A;Vázquez-Baeza Y;Ziemski M;Miwa HE;Kerere TA;Coote C;Bonneau R;Knight R;Oliveira G;Gopalasingam P;Kaehler BD;Cope EK;Metcalf JL;Robeson Ii MS;Bokulich NA;Caporaso JG
2020年10月，为应对2019冠状病毒病（COVID-19）大流行，我们的团队举办了第一个全在线研讨会，教授QIIME 2微生物组生物信息学平台。我们有来自6大洲至少25个不同国家的75名注册参与者，我们在4大洲有22名讲师。在为期5天的研讨会中，参与者实际操作了我们为本课程部署的基于云的共享计算集群。这次活动受到好评，与会者在讲习班后的调查问卷中提供了反馈和建议。2021年1月，我们在此研讨会之后举办了第二个完全在线的研讨会，并吸取了第一个研讨会的经验教训。在这里，我们将详细介绍我们用于运行这些研讨会的技术和协议，重点介绍第一个研讨会，然后介绍第二个研讨会所做的更改。我们讨论了哪些工作得好，哪些工作得不好，以及我们计划在未来的研讨会中做些什么不同的事情。
In October of 2020, in response to the Coronavirus Disease 2019 (COVID-19) pandemic, our team hosted our first fully online workshop teaching the QIIME 2 microbiome bioinformatics platform. We had 75 enrolled participants who joined from at least 25 different countries on 6 continents, and we had 22 instructors on 4 continents. In the 5-day workshop, participants worked hands-on with a cloud-based shared compute cluster that we deployed for this course. The event was well received, and participants provided feedback and suggestions in a postworkshop questionnaire. In January of 2021, we followed this workshop with a second fully online workshop, incorporating lessons from the first. Here, we present details on the technology and protocols that we used to run these workshops, focusing on the first workshop and then introducing changes made for the second workshop. We discuss what worked well, what didn’t work well, and what we plan to do differently in future workshops.
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