FasParser: a package for manipulating sequence data.
FasParser: a package for manipulating sequence data.
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FasParser：用于操作序列数据的包
DOI：
10.24272/j.issn.2095-8137.2017.017
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发表时间：
2017-03-18
影响因子：
4.9
通讯作者：
Sun YB
中科院分区：
文献类型：
--
作者：
Sun YB
开发了一个名为“FasParser”的计算机软件包，用于操作序列数据。它可以在个人计算机上用于执行一系列分析，包括在DNA和密码子水平上计数和查看两个序列之间的差异，识别两个比对之间的重叠区域，根据序列ID或长度对序列进行排序，连接多个基因座的序列一组特定的样本，将核苷酸序列翻译为氨基酸，并以几种不同的格式构建比对，以及为特定的FASTA文件提取和过滤数据。这些函数中的大多数都可以在批处理模式下运行，这对于分析大型数据集非常有用。这个软件包可以被广泛的受众使用，并且是为没有序列分析编程经验的研究人员设计的。FasParser的GUI版本可以从https：//github.com/Sun-Yanbo/FasParser免费下载。
A computer software package called 'FasParser' was developed for manipulating sequence data. It can be used on personal computers to perform series of analyses, including counting and viewing differences between two sequences at both DNA and codon levels, identifying overlapping regions between two alignments, sorting of sequences according to their IDs or lengths, concatenating sequences of multiple loci for a particular set of samples, translating nucleotide sequences to amino acids, and constructing alignments in several different formats, as well as some extracting and filtrating of data for a particular FASTA file. Majority of these functions can be run in a batch mode, which is very useful for analyzing large data sets. This package can be used by a broad audience, and is designed for researchers that do not have programming experience in sequence analyses. The GUI version of FasParser can be downloaded from https://github.com/Sun-Yanbo/FasParser, free of charge.