SCPD:: a promoter database of the yeast Saccharomyces cerevisiae
SCPD:: a promoter database of the yeast Saccharomyces cerevisiae
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DOI：
10.1093/bioinformatics/15.7.607
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发表时间：
1999-07-01
期刊：
影响因子：
5.8
通讯作者：
Zhang, MQ
中科院分区：
文献类型：
--
作者：
Zhu, J;Zhang, MQ
动机：为了在基因组水平上系统研究酿酒酵母启动子nod的转录调控顺式元件，我们建立了一个完整的酵母特异性启动子数据库SCPD.Results：目前SCPD包含580个转录因子（TF）结合位点和425个转录起始位点（TSS）。它还包含可用的相关结合亲和力和表达数据。除了启动子信息（包括序列）检索机制和数据提交表外，SCPD还提供了一些简单但有用的启动子序列分析工具。可用性：SCPD可从URL http://cgsig-ma.cshl.org/jian访问。数据库不断更新。联系方式：zhuj@cshl.org或mzhang@cshl.org
Motivation: In order to facilitate a systematic study of the promoters nod transcriptionally regulatory, cis-elements of the yeast Saccharomyces cerevisiae on a genomic scale, we have developed a comprehensive yeast-specific promoter database, SCPD.Results: Currently SCPD contains 580 experimentally mapped transcription factor (TF) binding sites and 425 transcriptional start sites (TSS) as its primary data entries. It also contains relevant binding affinity and expression data where available. In addition to mechanisms for promoter information (including sequence) retrieval and a data submission form, SCPD also provides some simple but useful fools for promoter sequence analysis.Availability: SCPD can be accessed from the URL http://cgsig-ma.cshl.org/jian. The database is continually updated.Contact: zhuj@cshl.org or mzhang@cshl.org