Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx).
Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx).
复制标题
使用语义网络形状表达式 (ShEx) 建模和验证 HL7 FHIR 配置文件。
DOI：
10.1016/j.jbi.2017.02.009
复制
发表时间：
2017-03
影响因子：
4.5
通讯作者：
Jiang G
中科院分区：
文献类型：
--
作者：
Solbrig HR;Prud'hommeaux E;Grieve G;McKenzie L;Mandel JC;Sharma DK;Jiang G
HL 7 Fast Healthcare Interoperability Resources（FHIR）是一种新兴的电子医疗信息交换开放标准。FHIR资源是用专门的建模语言定义的。FHIR实例目前可以用XML或JSON表示。FHIR和语义Web社区正在开发资源描述框架（RDF）中的第三种FHIR实例表示格式。形状表达式（ShEx），一种正式的RDF数据约束语言，是描述和验证FHIR RDF表示的候选语言。创建FHIR到ShEx的模型转换，并评估其描述和验证FHIR RDF数据的能力。我们创建的方法和工具，生成的ShEx模式建模的FHIR到RDF规范正在开发的HL 7 ITS/W3C RDF任务组，并评估的适用性ShEx的描述和验证的FHIR到RDF的转换。ShEx模型为达成共识做出了重大贡献。从FHIR模型到ShEx模式和从FHIR示例数据到RDF转换的语法转换被合并到FHIR构建过程中。代表109个FHIR资源的ShEx模式用于验证来自试用标准（STU 3）投票版本的511个FHIR RDF数据示例。我们能够发现FHIR到RDF规范中未解决的问题，并在实际实现中检测到10种错误和根本原因。自2016年9月以来，FHIR ShEx表示已被纳入STU 3选票版本的FHIR官方网页。ShEx可用于定义和验证FHIR资源的语法，这是对使用RDF模式（RDFS）和Web本体语言（OWL）进行语义验证的补充。ShEx被证明对于描述FHIR RDF数据的标准模型是有用的。正式的模型和简洁的格式相结合，使全面的审查和自动验证。
HL7 Fast Healthcare Interoperability Resources (FHIR) is an emerging open standard for the exchange of electronic healthcare information. FHIR resources are defined in a specialized modeling language. FHIR instances can currently be represented in either XML or JSON. The FHIR and Semantic Web communities are developing a third FHIR instance representation format in Resource Description Framework (RDF). Shape Expressions (ShEx), a formal RDF data constraint language, is a candidate for describing and validating the FHIR RDF representation. Create a FHIR to ShEx model transformation and assess its ability to describe and validate FHIR RDF data. We created the methods and tools that generate the ShEx schemas modeling the FHIR to RDF specification being developed by HL7 ITS/W3C RDF Task Force, and evaluated the applicability of ShEx in the description and validation of FHIR to RDF transformations. The ShEx models contributed significantly to workgroup consensus. Algorithmic transformations from the FHIR model to ShEx schemas and FHIR example data to RDF transformations were incorporated into the FHIR build process. ShEx schemas representing 109 FHIR resources were used to validate 511 FHIR RDF data examples from the Standards for Trial Use (STU 3) Ballot version. We were able to uncover unresolved issues in the FHIR to RDF specification and detect 10 types of errors and root causes in the actual implementation. The FHIR ShEx representations have been included in the official FHIR web pages for the STU 3 Ballot version since September 2016. ShEx can be used to define and validate the syntax of a FHIR resource, which is complementary to the use of RDF Schema (RDFS) and Web Ontology Language (OWL) for semantic validation. ShEx proved useful for describing a standard model of FHIR RDF data. The combination of a formal model and a succinct format enabled comprehensive review and automated validation.
DOI：
10.1093/jamia/ocw015
发表时间：
2016-07-01
影响因子：
6.4
作者：
Warner, Jeremy L.;Rioth, Matthew J.;Alterovitz, Gil
通讯作者：
Alterovitz, Gil
DOI：
10.1093/jamia/ocv045
发表时间：
2015-11-01
影响因子：
6.4
作者：
Alterovitz, Gil;Warner, Jeremy;Kohane, Isaac S.
通讯作者：
Kohane, Isaac S.