Cardiometabolic risk loci share downstream cis- and trans-gene regulation across tissues and diseases.

Cardiometabolic risk loci share downstream cis- and trans-gene regulation across tissues and diseases.
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DOI:
10.1126/science.aad6970
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发表时间:
2016-08-19
期刊:
Science (New York, N.Y.)
影响因子:
--
通讯作者:
Björkegren JL
Björkegren JL
中科院分区:
其他
文献类型:
--
作者:
Franzén O;Ermel R;Cohain A;Akers NK;Di Narzo A;Talukdar HA;Foroughi-Asl H;Giambartolomei C;Fullard JF;Sukhavasi K;Köks S;Gan LM;Giannarelli C;Kovacic JC;Betsholtz C;Losic B;Michoel T;Hao K;Roussos P;Skogsberg J;Ruusalepp A;Schadt EE;Björkegren JL

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全基因组关联研究(GWAS)已经确定了数百个心脏代谢疾病(CMD)的风险位点。然而,它们对遗传变异的贡献很小,并且大多数下游基因调控机制尚不清楚。我们在STARNET研究中对600例冠状动脉疾病患者的血管和代谢组织进行了基因分型和RNA测序。与GWAS鉴定的CMD风险SNP相关的基因表达性状在STARNET中比在组织和疾病非特异性基因组织表达研究中更广泛地发现,表明跨组织和CMD共享下游顺式/反式基因调控。相比之下,其他GWAS风险SNP的调节作用是组织特异性的;腹部脂肪成为血脂的重要基因调节位点,例如LDL-胆固醇和冠状动脉疾病风险基因PCSK 9。STARNET为CMD风险位点的基因调控机制提供了深入见解,促进其转化为诊断,治疗和预防的机会。
Genome-wide association studies (GWAS) have identified hundreds of cardiometabolic disease (CMD) risk loci. However, they contribute little to genetic variance, and most downstream gene-regulatory mechanisms are unknown. We genotyped and RNA-sequenced vascular and metabolic tissues from 600 coronary artery disease patients in the STARNET study. Gene expression traits associated with CMD risk SNPs identified by GWAS were more extensively found in STARNET than in tissue- and disease-unspecific gene-tissue expression studies, indicating sharing of downstream cis-/trans-gene regulation across tissues and CMDs. In contrast, the regulatory effects of other GWAS risk SNPs were tissue-specific; abdominal fat emerged as an important gene-regulatory site for blood lipids, such as for the LDL-cholesterol and coronary artery disease risk-gene PCSK9. STARNET provides insights into gene-regulatory mechanisms for CMD risk loci, facilitating their translation into opportunities for diagnosis, therapy and prevention.
DOI: 10.1038/nature14132
发表时间: 2015-02-12
期刊: NATURE
影响因子: 64.8
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