shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos: an R/Shiny application for interactive creation of Circos plot
复制标题
shinyCircos：用于交互式创建 Circos 绘图的 R/Shiny 应用程序
DOI：
10.1093/bioinformatics/btx763
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发表时间：
2018-04-01
期刊：
影响因子：
5.8
通讯作者：
Yao, Wen
中科院分区：
文献类型：
--
作者：
Yu, Yiming;Ouyang, Yidan;Yao, Wen
总结
Circos图的创建是可视化基因组数据的最有效方法之一。然而，安装和使用现有的工具，使Circos图是具有挑战性的用户缺乏编码经验。为了解决这个问题，我们开发了一个R/Shiny应用程序shinyCircos，这是一个用于交互式创建Circos图的图形用户界面。shinyCircos可以很容易地安装在个人使用的计算机上，也可以安装在本地或公共服务器上，为社区提供在线使用。此外，各种类型的Circos图可以很容易地生成和装饰简单的鼠标点击。
可用性和实施
shinyCircos及其手册可在https://github.com/venyao/shinyCircos上免费获得。shinyCircos部署在https://yimingyu.shinyapps.io/shinycircos/和http://shinycircos.ncpgr.cn/上供在线使用。
接触
diana1983941@mail.hzau.edu.cn或yaowen@henau.edu.cn。
Summary
Creation of Circos plot is one of the most efficient approaches to visualize genomic data. However, the installation and use of existing tools to make Circos plot are challenging for users lacking of coding experiences. To address this issue, we developed an R/Shiny application shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or public servers to provide online use to the community. Furthermore, various types of Circos plots could be easily generated and decorated with simple mouse-click.
Availability and implementation
shinyCircos and its manual are freely available at https://github.com/venyao/shinyCircos. shinyCircos is deployed at https://yimingyu.shinyapps.io/shinycircos/ and http://shinycircos.ncpgr.cn/ for online use.
Contact
diana1983941@mail.hzau.edu.cn or yaowen@henau.edu.cn.