PROSITE - A DICTIONARY OF SITES AND PATTERNS IN PROTEINS
PROSITE - A DICTIONARY OF SITES AND PATTERNS IN PROTEINS
复制标题
DOI：
10.1093/nar/19.suppl.2241
复制
发表时间：
1991-04-25
影响因子：
14.9
通讯作者：
BAIROCH, A
中科院分区：
文献类型：
--
作者：
BAIROCH, A
PROSITE中编译的一些模式已经发表在文献中，但大多数是作者在过去两年中开发的。格式PROSITE数据库由两个ASCII（文本）文件组成。第一个文件(PROSITE。DAT)是一种计算机可读的文件，它包含了使用PROSITE扫描带有模式的序列的程序所需的所有信息。对于所描述的每种模式，该文件还包括在SWISS-PROT蛋白质序列数据库[7]中扫描该模式时获得的命中数的统计数据。对相应的SWISS-PROT条目的交叉引用也存在于该文件中。第二个文件(PROSITE。DOC)，我们称之为教科书，它包含记录每种模式的文本信息。用户手册（PROSUSER）。TXT)随数据库分发，它完整地描述了这两个文件的格式。图1显示了一个示例教科书条目，其中包含来自模式文件的相应数据。
Some of the patterns compiled in PROSITE have been published in the literature, but the majority have been developed, in the last two years, by the author.FORMAT The PROSITE database is composed of two ASCII (text) files. The first file (PROSITE. DAT) is a computer-readable file that contains all the information necessary to programs that make use of PROSITE to scan sequence (s) with pattern (s). This file also includes, for each of the patterns described, statistics on the number of hits obtained while scanning for that pattern in the SWISS-PROT protein sequence data bank [7]. Cross-references to the corresponding SWISS-PROT entries are also present in that file. The second file (PROSITE. DOC), which we call the textbook, contains textual information that documents each pattern. A user manual (PROSUSER. TXT) is distributed with the database, it fully describes the format of both files. A sample textbook entry is shown in Figure 1 with the corresponding data from the pattern file.