Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
复制标题
DOI：
10.1016/j.jsb.2016.04.010
复制
发表时间：
2016-07-01
影响因子：
3
通讯作者：
Carazo, J. M.
中科院分区：
文献类型：
--
作者：
de la Rosa-Trevin, J. M.;Quintana, A.;Carazo, J. M.
在过去的几年里，三维电子显微镜（3DEM）经历了仪器和方法的革命。在这场影响广泛的变革中，核心角色之一是图像处理软件的不断发展。在这里，我们提出了Scipion，通过基于工作流的方法集成几个3DEM软件包的软件框架。Scipion允许执行可重复使用，标准化，可追溯和可再现的图像处理协议。这些协议整合了来自不同程序的工具，同时提供了它们之间的完全互操作性。Scipion是一个开源项目，可以从http://scipion.cnb.csic.es下载。(C)2016 Elsevier Inc. All rights reserved.
In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this wide-reaching change is the continuous development of image processing software. Here we present Scipion, a software framework for integrating several 3DEM software packages through a workflow-based approach. Scipion allows the execution of reusable, standardized, traceable and reproducible image-processing protocols. These protocols incorporate tools from different programs while providing full interoperability among them. Scipion is an open-source project that can be downloaded from http://scipion.cnb.csic.es. (C) 2016 Elsevier Inc. All rights reserved.