The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding
The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding
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DOI：
10.3835/plantgenome2014.12.0099
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发表时间：
2016-07-01
期刊：
影响因子：
4.2
通讯作者：
Jannink, Jean-Luc
中科院分区：
文献类型：
--
作者：
Blake, Victoria C.;Birkett, Clay;Jannink, Jean-Luc
小麦族数据库（http：triticeaetoolbox.org; T3）是使植物育种者和研究人员能够联合收割机、可视化和查询由小麦族协调农业项目（TCAP）生成的大量表型和基因型数据的数据库模式。T3使用户能够定义特定的数据集，以便以与外部工具TASSEL、Flapjack和R兼容的格式下载;或者由驻留在T3服务器上的软件用于诸如全基因组关联和基因组预测之类的操作。协助植物育种者的新T3工具包括选择指数生成器、使用通用或用户定义指数比较表型试验的分析工具、苗圃报告直方图生成器、使用Android操作系统的应用程序以及正在开发的田间地块布局设计器。使用T3的研究人员很快将能够设计训练集，定义核心种质集，并进行多变量分析。与GrainGenes加强合作，并与小谷物参考序列资源整合，将使T3在实时数据分析中发挥关键作用，并可即时访问小麦和大麦的知识数据库。T3软件在GNU通用公共许可证下提供，并可免费下载。
The Triticeae Toolbox (http://triticeaetoolbox.org; T3) is the database schema enabling plant breeders and researchers to combine, visualize, and interrogate the wealth of phenotype and genotype data generated by the Triticeae Coordinated Agricultural Project (TCAP). T3 enables users to define specific data sets for download in formats compatible with the external tools TASSEL, Flapjack, and R; or to use by software residing on the T3 server for operations such as Genome Wide Association and Genomic Prediction. New T3 tools to assist plant breeders include a Selection Index Generator, analytical tools to compare phenotype trials using common or user-defined indices, and a histogram generator for nursery reports, with applications using the Android OS, and a Field Plot Layout Designer in development. Researchers using T3 will soon enjoy the ability to design training sets, define core germplasm sets, and perform multivariate analysis. An increased collaboration with GrainGenes and integration with the small grains reference sequence resources will place T3 in a pivotal role for on-the-fly data analysis, with instant access to the knowledge databases for wheat and barley. T3 software is available under the GNU General Public License and is freely downloadable.